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Publication
PropertyValue
Working Groups AG Cyganek, AG Tiburcy, AG Zimmermann
SubprojectC04, S01
Open AccessOpen Access Yes
Publication TypePreprint
Peer ReviewedNo
DOIDOI 10.1101/2025.04.29.650605
Publication Year2025
TitleSarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes
JournalbioRxiv
ISSNno ISSN (NLM ID:101680187)
URL https://doi.org/10.1101/2025.04.29.650605
Journal AbbreviationbioRxiv
AuthorsHärtter D, Hauke L, Driehorst T, Long Y, Bao G, Primeßnig A, Berečić B, Cyganek L, Tiburcy M, Schmidt CF, Zimmermann W
First AuthorHärtter D
Last AuthorZimmermann W

 External Resources

 biorxiv....ll.pdf  Article fulltext

 gro-2/149893  GRO.publications identifier

 9606  NCBI taxonomy (human, Homo sapiens)

 0000-0002-9582-6141  ORCID identifier (Daniel Härtter)

 0000-0003-0777-6859  ORCID identifier (Lara Hauke)

 0000-0001-9120-1382  ORCID identifier (Lukas Cyganek)

 0000-0002-6942-6275  ORCID identifier (Malte Tiburcy)

 0000-0003-2864-6973  ORCID identifier (Christoph F. Schmidt)

 0000-0003-1190-4040  ORCID identifier (Wolfram Hubertus Zimmermann)

 1217  Published Data Registry entry (MBExC)

 1/607  Research Data Archive MBExC (supplemental material)

 00py81415  ROR identifier (00py81415, Duke University)

 01s1h3j07  ROR identifier (01s1h3j07, Fraunhofer Institute for Translational Medicine and Pharmacology)

 031t5w623  ROR identifier (031t5w623, German Centre for Cardiovascular Research)

 05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 SCR_002630  SciCrunch identifier (RRID:SCR_002630, GitHub)

 SCR_020233  SciCrunch identifier (RRID:SCR_020233, Leica: TCS SP5 Broadband Confocal Laser Scanning Microscope)

 SCR_022765  SciCrunch identifier (RRID:SCR_022765, Napari)

 SCR_008394  SciCrunch identifier (RRID:SCR_008394, Python)

 SCR_018536  SciCrunch identifier (RRID:SCR_018536, PyTorch)

 SCR_021142  SciCrunch identifier (RRID:SCR_021142, scikit-image)

 SCR_002577  SciCrunch identifier (RRID:SCR_002577, scikit-learn)

 SCR_023270  SciCrunch identifier (RRID:SCR_023270, Yokogawa CellVoyager CV8000)

 biorxiv....d=true  Supplemental material

 github.c...e-unet  Supplemental material (code)

 github.com/danihae/SarcAsM  Supplemental material (code)

 pypi.org/project/sarc-asm/  Supplemental material (code)

 sarcasm.readthedocs.io/  Supplemental material (code, documentation)

 hpscreg....i002-A  Supplemental material (hpscreg identifier)

 biorxiv....d=true  Supplemental material (video)

 biorxiv....d=true  Supplemental material (video)

 biorxiv....d=true  Supplemental material (video)

 biorxiv....d=true  Supplemental material (video)

 10.5281/zenodo.8232838  Zenodo identifier (10.5281/zenodo.8232838)